[gmx-users] my octane was divided into four parts

[Dallas Warren]

>firstly, and then I add water in the z direction. When i continued to 
>minimized the water+octane,my octane was divide into four separate parts.Why?

I would recommend that you get your hands on the latest version of VMD.  It 
now has the ability to add the repeating cell units in the +ve and -ve axis 
directions.  It can come in very handy for visualisation, particularly when 
there are aggregates involved or units that may be close to the boundary.

Catch ya,

Dr. Dallas Warren
Research Fellow
Department of Pharmaceutical Biology and Pharmacology
Victorian College of Pharmacy, Monash University
381 Royal Parade, Parkville VIC 3010
dallas.warren at vcp.monash.edu.au
+61 3 9903 9083
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When the only tool you own is a hammer, every problem begins to resemble a nail.
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