[gmx-users] mpi version
Ilya Chorny
ichorny at maxwell.compbio.ucsf.edu
Wed Sep 24 19:10:02 CEST 2003
I still don't really understand what to do. I installed the newest
version of the LAM, and the most up to date version of fftw with mpi
support. What should I do next.
Ilya
On Mon, 2003-09-22 at 12:03, Erik Lindahl wrote:
> Hi,
>
> Both MPICH and LAM-MPI are incredibly picky. You need to compile all
> libraries and programs with exactly the same version of the MPI library
> (and probably compiler) as you have installed when running.
>
> There is an emerging "interoperable MPI" standard, but it's not fully
> implemented in LAM yet.
>
> Cheers,
>
> Erik
>
> On Monday, September 22, 2003, at 11:55 AM, David wrote:
>
> > On Mon, 2003-09-22 at 20:32, Ilya Chorny wrote:
> >> Hi David,
> >>
> >> You didn't finish your last statement.
> > I think I did...
> >
> > It could also be that your compile system is too old compared to the
> > systems you run on...
> >>
> >> Ilya
> >>
> >> On Mon, 2003-09-22 at 10:43, David wrote:
> >>> On Mon, 2003-09-22 at 19:29, Ilya Chorny wrote:
> >>>> When I try and install an mpi version it compiles but when I
> >>>> execute it I get:
> >>>>
> >>>> mdrun_mpi: relocation error: /usr/local/lib/libsfftw_mpi.so.2:
> >>>> symbol
> >>>> errno, version GLIBC_2.0 not defined in file libc.so.6 with link
> >>>> time
> >>>> reference.
> >>>>
> >>>> Can someone help me with this?
> >>>
> >>> library problem. You probably compiled on a machine with newer OS
> >>> than
> >>> the one you are running on. (e.g. Redhat 9 and 8)
> >>>
> >>> the other way around could also be...
> >>>>
> >>>> Thanks
> >>>>
> >>>> Ilya
> >>>>
> >>>>
> >>>> _______________________________________________
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> >>
> >> _______________________________________________
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> > --
> > Groeten, David.
> > _______________________________________________________________________
> > _
> > Dr. David van der Spoel, Dept. of Cell and Molecular Biology
> > Husargatan 3, Box 596, 75124 Uppsala, Sweden
> > phone: 46 18 471 4205 fax: 46 18 511 755
> > spoel at xray.bmc.uu.se spoel at gromacs.org http://xray.bmc.uu.se/~spoel
> > +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> > +
> >
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