[gmx-users] position restraints

David spoel at xray.bmc.uu.se
Sat Apr 24 14:20:01 CEST 2004


On Fri, 2004-04-23 at 22:51, Pedro Alexandre Lapido Loureiro wrote:
> Hi!,
> 
> I am trying to restrain a molecule (atoms 18208 .. 18220) in my system using 
> the file posre.itp.
> When I run grompp, it crashes saying:
> "Atom index (18208) out of bounds (1 - 3)"
> Do you have any suggestions?
seems like the include statement is after the water molecule rather than
directly after the protein
> 
> Regards.
> 
> Pedro.
> 
> --
> Pedro Alexandre Lapido Loureiro
> Laboratório de Física Biológica
> Instituto de Biofísica
> UFRJ
> Brasil 
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assist. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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