[gmx-users] grompp error

David spoel at xray.bmc.uu.se
Tue Apr 27 08:24:01 CEST 2004


On Mon, 2004-04-26 at 23:38, Osmany Guirola Cruz wrote:
> when i run the grompp i have these error
> calling /lib/cpp...
> /lib/cpp: not found
> cpp exit code: 32512
> Tried to execute: '/lib/cpp  -I/usr/local/gromacs/share/top  cpeptide.top > 
> gromppXjWLUK'
> The '/lib/cpp' command is defined in the .mdp file
> processing topology...
> processing coordinates...
> Fatal error: number of coordinates in coordinate file (cpeptide.gro, 143)
>              does not match topology (cpeptide.top, 0)
> 
> what should i do>
> THANKS

you didn't say what system you use.

install a compiler would fix it.
> 
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assist. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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