[gmx-users] cdist and pdb2gmx -alldih

[Ruben Martinez Buey]

Hi all,

In the reference manual you can read for cdist:

"The program uses proper dihedrals to give a distance too, as minimum
respectively maximum the cis and trans configurations are taken. It is
therefore beneficial to use the -alldih option
of pdb2gmx to generate a topology with all dihedrals in there".

But I cannot see the -alldih option in pdb2gmx... Is it on by defect?

Thanks in advance for your kind attention,
Cheers,
Ruben