[gmx-users] cdist and pdb2gmx -alldih

Ruben Martinez Buey ruben at akilonia.cib.csic.es
Wed Apr 28 20:17:01 CEST 2004

Hi all,

In the reference manual you can read for cdist:

"The program uses proper dihedrals to give a distance too, as minimum
respectively maximum the cis and trans configurations are taken. It is
therefore beneficial to use the -alldih option
of pdb2gmx to generate a topology with all dihedrals in there".

But I cannot see the -alldih option in pdb2gmx... Is it on by defect?

Thanks in advance for your kind attention,

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