[gmx-users] getting problem in some of the commonds

[Chng Choon Peng]

Hi Alok,

  You'll have to install xpsview and xmgrace in /usr/local/bin, say.
For XMGrace you can get it from http://plasma-gate.weizmann.ac.il/Grace/
as a binary or RPM.
As for my_dssp, you'll need to get DSSP first and then set the path as
outlined in the my_dssp documentation page.


Cheers,
Choon-Peng

-- 
Mr. Choon-Peng CHNG
Research Associate
Computational Biology Group
BioInformatics Institute, BMSI, A*STAR
30 Biopolis Street
#07-01 Matrix Building
Singapore 138671
Tel (O): +65 64788301 Fax (O): +65 64789047
www.bii.a-star.edu.sg/~cpchng


On 7/31/04 5:15 PM, "Alok" <alokjain at iitk.ac.in> wrote:

> Hello
>       All
> 
> I am Alok Jain ...new user of Gromacs ...
> I install the  3.2.1 VERSION in my PC (LINUX-MANDRAKE) .
> I was trying to run the online example  (S-PEPTIDE) in my PC.
> but i have facing some problems like commond  xpsview ,xmgrace,my_dssp are
> not found.. So plz help me what i can do..
> I install the Gromacs by using diffrent RPM'S (available at gromacs.org).
> Thanks in advance..
> 
> ..........................
> ALOK JAIN
> M.TECH (Biological Science $ Bioengineering)
> IIT KANPUR
> KANPUR-208016
> INDIA.
> PH 98390-32806
> EMAIL-alokjain at iitk.ac.in
>     alokjain16 at yahoo.com
> ...........................
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