[gmx-users] mpich job hangs on exit

Anton Feenstra feenstra at chem.vu.nl
Wed Aug 4 11:58:23 CEST 2004


David van der Spoel wrote:
> Maybe time to make a short test problem...
> It could also be due to a combination of MPI and queueing system, but if 
> you can reproduce it in a ten step simulation you can try running with 
> -debug,

OK, did that. I now have a 40k atom system (protein + water) that runs for
10 steps on 8 CPU's and than hangs during exit, as I described previously.
Turning on -debug eliminates the problem. What is the next step?


-- 
Groetjes,

Anton
  _____________ _______________________________________________________
|             |                                                       |
|  _   _  ___,| K. Anton Feenstra                                     |
| / \ / \'| | | Dept. of Pharmacochem. - Vrije Universiteit Amsterdam |
|(   |   )| | | De Boelelaan 1083 - 1081 HV Amsterdam - Netherlands   |
| \_/ \_/ | | | Tel: +31 20 44 47608 - Fax: +31 20 44 47610           |
|             | Feenstra at chem.vu.nl - www.chem.vu.nl/~feenstra/       |
|             | "If You See Me Getting High, Knock Me Down"           |
|             | (Red Hot Chili Peppers)                               |
|_____________|_______________________________________________________|



More information about the gromacs.org_gmx-users mailing list