[gmx-users] g_anaeig

[barrett]

David

Thanks.

But 2D or 3D don't do what I want, as I understand them.

The output of a 2D run for an example 6 frame trajectory (timescrambled,
as it happens)looks like:

@    xaxis  label "projection on eigenvector 1 (nm)"
@    yaxis  label "projection on eigenvector 2 (nm)"
@TYPE xy
   0.03304    0.19576
   0.03397    0.17645
   0.01622   -0.16512
  -0.05080   -0.01361
  -0.17756    0.04269
  -0.01923   -0.07211

But I don't want to know the projection on the eigenvectors of my
trajectory. I want a set of whole protein structures, in the manner
created by

g_anaeig ... -extr -nframes 40

Thanks for the suggestion, but I don't think it's the answer.

Paul

-----Original Message-----
From: gmx-users-bounces at gromacs.org
[mailto:gmx-users-bounces at gromacs.org] On Behalf Of David van der Spoel
Sent: 06 August 2004 14:04
Cc: gmx-users at gromacs.org
Subject: Re: [gmx-users] g_anaeig


Have you tried the 2d and 3d proj options?

--
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++

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