[gmx-users] essential dynamics

[John Simms]

Hi all,
I would like to run essentail dynamics on a membrane protein, I have run an
unconstrained simulation for 1ns and would like to use the eigenvectors for
essential dynamics. I know that there is a program on the contibutions pages
for the setup. So do i just make the ei file from this programs and use the
command mdrun as normal ie
mdrun -v -s full.tpr -o full.trr -e full.edr -ei full.edi -c
after_full -nice X (without the grompp step)
and the system will drive the simulation down the eigenvectors?
Sorry for such a stupid question, just wanted to make sure ;-)
Cheers
John