[gmx-users] Solvate a box with a non water

[David]

On Tue, 2004-08-17 at 22:00, Tandia, Adama wrote:
> Dear ALL:
> I would like to fill up randomly a box with N molecules of DPPC and solvate 
> the newly created box with a solvent of type B.
> How can I do that with GROMACS?
> I used genbox to create a dppc solute, a B solvent and solvate the dppc box, but I have 
> A Segmentation Fault message when I run mdrun.
> Can somebody help me with this?
> 
I just sent a reply to a very similar question to the list yesterday.
Such SEGVs are usually due to a bad starting structure. Check your
coordinates (and that mail from yesterday).

> Thanks a lot in advance.
> 
> Adama Tandia
> Modeling & Simulation
> Corning INC
> Corning, NY 14831 USA
> Tel:  607 248 1036
> Fax: 607 974 3405
> www.corning.com
> 
> 
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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