[gmx-users] g_confrms : fit vs rmsd group

[Nuno R. L. Ferreira]

Hi all

Are the same groups used for the fit of the 2 structures, used for the
calculation of the rmsd, i.e., if I fit two proteins in their backbone, the
calculated rmsd is also calculated between the backbones?

Regards
Nuno

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Nuno Ricardo Santos Loureiro da Silva Ferreira
Ph.D student
Grupo de Química Biológica
Departamento de Química
Faculdade de Ciências e Tecnologia
Universidade de Coimbra
3004-535 Coimbra
Portugal
www.biolchem.qui.uc.pt
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" Do not worry about your dificulties in mathematics.
   I can assure you that mine are still greater."
                                       e=mc2
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