[gmx-users] Draining water from simulation box

[David van der Spoel]

On Mon, 2004-08-23 at 08:54, Gaurav Porwal wrote:
> Dear all,
> 
> After a MD simulation in water, is there a way in which we can remove the
> water from the box so that the end structure is more clearly visible.
> 
editconf for a single structure
trjconv for a trajectory
either should be used with an index file.

> Thank you.
> 
> Regards,
> Gaurav
> 
> **********************************************************************
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> **********************************************************************
> 
>                            Gaurav Porwal
> 		    Senior Undergraduate Student
> 		  Department of Chemical Engineering
>                          IIT Bombay, Powai
>                           Mumbai - 400076
>                               INDIA   
>                           Ph. - 9869277620
> 
> Alternative Email Id's :-
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> 
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> 
> 
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone:  +46 18 471 4205  fax: +46 18 511 755
spoel at xray.bmc.uu.se    spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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