[gmx-users] How to make itp with pdb2gmx?
gromacs_newbie at yahoo.com
Thu Aug 26 19:29:49 CEST 2004
I got this from the example.top on Tieleman's site:
; topology for 1 alm molecule, 128 popc lipids, water
and 1 counter ion
; alm.itp can be made in a straightforward manner with
; with a pdb file of alamethicin.
; make sure lipid.itp, popc.itp and alm.itp are in a
; grompp can find them (GMXLIB, current directory, or
directory given in
; the .mdp file with the include option.
How do you generate an itp file in a straightforward
manner with pdb2gmx?
Is there any other way to generate alm.itp for
alamethicin? I have tried PRODRG with no success.
Thanks in advance.
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