[gmx-users] g_confrms: output of translation vector and rotationmatrix

Berk Hess gmx3 at hotmail.com
Tue Aug 31 11:13:47 CEST 2004

>From: Markus O Kaukonen <mokaukon at cc.helsinki.fi>
>Reply-To: Discussion list for GROMACS users <gmx-users at gromacs.org>
>To: gmx-users at gromacs.org
>Subject: [gmx-users] g_confrms: output of translation vector and 
>rotationmatrix Date: Tue, 31 Aug 2004 11:10:49 +0300 (EEST)
>Dear All,
>Is it somehow possible to obtain the actual
>translation vector and rotation matrix between similar structures
>in different cartesian coordinate systems from
>g_confrms (or any other gromacs) program ?
>This would be usefull when transforming coordinates of small pieces of
>protein into the coordinate system of the other.

I think you can get these coordinates from the fit.pdb ouput of g_confrms.


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