[gmx-users] how to read binary file rmsd.dat

[arnab mukherjee]

Dear All,

I am a new user of Gromacs. I was interested in calculation of the
RMSD values along a trajectory --- for all structures with one
another. So for a list of N trajectory, I should get a N dimensional
matrix with N(N-1)/2 independent RMSD values.
g_rms does this with the option -bin. It generates a xpm impage also. 

 But I need the values of the matrix in normal ascii format. I tried
several ways --- includin C and Perl program. But I could not obtain
the values of  RMSD.

Can you please tell me how to get the RMSD matrix in nomal ascii
format or is there another way to get that?

 Awaiting eagerly for a reply,

Arnab Mukherjee

-- 
Arnab Mukherjee
Solid state and Structural Chemistry Unit
Indian Insitute of Science 
Bangalore - 560012
India