[gmx-users] pdb2gmx -ff oplsaa -water tip4p / cut-offs for oplsa
Anton Feenstra
feenstra at few.vu.nl
Wed Dec 15 16:31:43 CET 2004
David van der Spoel wrote:
>>but the original JACS paper (1996,118,11228) talks about cutoffs of 15A
>>for amides!? so if we are using PME, would rlist=rcoulomb=0.9 (no
>>switching), rvdw=1.4 (cut-off) and nslist=5 be resonable with oplsa?
>
> Yes, I use that routinely.
And if I'd not want to use PME (e.g., for testing & benchmarking), is
OPLS then normally used with simple cut-off or with a reaction field?
--
Groetjes,
Anton
_____________ _______________________________________________________
| | |
| _ _ ___,| K. Anton Feenstra |
| / \ / \'| | | Dept. of Pharmacochem. - Vrije Universiteit Amsterdam |
|( | )| | | De Boelelaan 1083 - 1081 HV Amsterdam - Netherlands |
| \_/ \_/ | | | Room P275 Tel: +31 20 44 47608 Fax: +31 20 44 47610 |
| | Feenstra at few.vu.nl - www.few.vu.nl/~feenstra/ |
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