[gmx-users] question about g_sas
caoch_57 at hotmail.com
Mon Dec 20 16:41:42 CET 2004
i used g_sas to plot per resdiue's solvent accessible surface area( the
input file is confoug.gro and topol.tpr). the output resarea.xvg file is
@ title "Area per residue"
@ xaxis label "Residue"
@ yaxis label "Area (nm\S2\N)"
1 0 0
2 0.0925984 0
3 0 0
4 0.0226195 3.13147e-06
if the second column value indicates the area of residue then what is the
meaning of the third column value (ie: 3.13147e-06)?
also i don't know the algorithm of the programme. does it only caclute
per residue's solvent accessible area? it seems the result of g_sas tool is
different with other sas compute programme.
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