[gmx-users] solvent box

[sadhna]

hi all,
       While doing MD in water my peptide is not confined to the centre
of the box and sometimes a part of the peptide also goes out of the box,
though i have used box size of appropriate length. where could be the
problem?

thanks in advance
sadhna

Sadhna Joshi
Research Scholar
Dept of Chemical Engg
Indian Institute of Technology,Powai
Mumbai-400076
India