[gmx-users] got seg fault

gmx at 4ka.mipt.ru gmx at 4ka.mipt.ru
Sun Jan 4 14:02:01 CET 2004


Привет.

During md simulation of  SiO2
i've got seg fault with sig 11:
$ gdb ../../i386_d_g/bin/mdrun_d -c mdrun_d.core
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This GDB was configured as "i386-unknown-openbsd3.3"...
Core was generated by `mdrun_d'.
Program terminated with signal 11, Segmentation fault.
Reading symbols from /usr/libexec/ld.so...done.
Reading symbols from /usr/lib/libm.so.1.0...done.
Reading symbols from /usr/local/lib/libXm.so.2.1...done.
Reading symbols from /usr/X11R6/lib/libXt.so.7.0...done.
Reading symbols from /usr/X11R6/lib/libSM.so.7.0...done.
Reading symbols from /usr/X11R6/lib/libICE.so.7.0...done.
Reading symbols from /usr/X11R6/lib/libXext.so.7.0...done.
Reading symbols from /usr/X11R6/lib/libXp.so.7.0...done.
Reading symbols from /usr/X11R6/lib/libX11.so.7.0...done
#0  0x7e2ef in tabulate_eir (natom=1991068, x=0x0, kmax=-809511080,
                    eir=0xcfbfd2f0, lll=0x0) at ewald.c:82
82            eir[1][i][m].re = cos(x[i][m]*lll[m]);


Also simulation doesn't go  with any coloumbtype exept Cut-off.
I think, the clue is in fft part of gromacs, but not sure.
Can anybody help me to figure out where the error could be?
Wrong my *.gro, *.top , *.mdp or its a bug in gmx code?
10x in advance.
							Lala Chen.







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