[gmx-users] position restraints and minimizers

Anton Feenstra feenstra at chem.vu.nl
Wed Jan 7 14:24:01 CET 2004


Malcolm Gillies wrote:

> Hi --
> 
> do any of the minimizers in gromacs (3.1.4, 3.2.0 or CVS versions) work
> with position restraints?

Yes.

> I'm trying to duplicate a published CHARMM protocol that begins with a
> C-alpha-restrained CG minimization of a PDB structure.

I use steep & posres in my equilibration protocol.


-- 
Groetjes,

Anton
  _____________ _______________________________________________________
|             |                                                       |
|  _   _  ___,| K. Anton Feenstra                                     |
| / \ / \'| | | Dept. of Pharmacochem. - Vrije Universiteit Amsterdam |
|(   |   )| | | De Boelelaan 1083 - 1081 HV Amsterdam - Netherlands   |
| \_/ \_/ | | | Tel: +31 20 44 47608 - Fax: +31 20 44 47610           |
|             | Feenstra at chem.vu.nl - www.chem.vu.nl/~feenstra/       |
|             | "If You See Me Getting High, Knock Me Down"           |
|             | (Red Hot Chili Peppers)                               |
|_____________|_______________________________________________________|





More information about the gromacs.org_gmx-users mailing list