[gmx-users] Problems with MD simulations
Tanos
tanos at ime.eb.br
Mon May 17 13:37:41 CEST 2004
Hi Folks,
Two of my last MD simulations stopped sundenlly showing the message
below:
"t = 658.476 ps: Water molecule starting at atom 77348 can not be settled.
Check for bad contacts and/or reduce the timestep.Wrote pdb files with
previous
and current coordinates
Large VCM(group rest): -339367968.00000, -369255712.00000,
-340297184.00000, eki
n-cm: 1.51182e+23"
Does someone knows some reason for this problem and how could solve
this ???? Should I minimize futher my system ???? What does it means
"Water molecule can not be settled" ???? How reducing time step could
help ????
Tanos Celmar Costa Franca - IME
Rio de Janeiro - RJ
Brazil
More information about the gromacs.org_gmx-users
mailing list