[gmx-users] job crash

[David van der Spoel]

On Thu, 2004-05-27 at 09:46, B. Nick wrote:
> Dear gromacs users,
> 
> I want to rerun a previous job that executed on a
> different cluster without any problem. But every time
> the job crashes after few minutes with the following
> error messages. 
> (Other people simulating different system say that
> the have no problems.)

Can you be more specific? Is this the same job that ran on four
processors before? Or is it a mdrun -rerun?
> 
> Any suggestion what is my problem???
> 
> Back Off! I just backed up traj.xtc to ./#traj.xtc.1#
> Fatal error: ci = 2280 should be in 0 .. 2196 [FILE nsgrid.c, LINE 210]
> Error on node 1, will try to stop all the nodes
> Fatal error: ci = 2280 should be in 0 .. 2196 [FILE nsgrid.c, LINE 210]
> Error on node 2, will try to stop all the nodes
> Fatal error: ci = 2280 should be in 0 .. 2196 [FILE nsgrid.c, LINE 210]
> Error on node 3, will try to stop all the nodes
> Fatal error, aborting.
> Fatal error, aborting.
> Fatal error, aborting.
> Job sge.628260 on sunc12.rz.RWTH-Aachen.DE: received signal ABRT.
> 
> ------------------------------------------------------------------------------
> | Execution of Batch-Request stopped at Thu May 27 00:40:58 MEST 2004
> | peak memory value: 13.72M
> | real time used: 00:18:17
> ------------------------------------------------------------------------------
> 
> Thank you very much,
> Gitta
-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone:  +46 18 471 4205  fax: +46 18 511 755
spoel at xray.bmc.uu.se    spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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