[gmx-users] Re: Movie from PDB files

[Itamar Kass]

  YOu can use VMD to produce POVRAY files and then use POVRAY to create a
movie.
----- Original Message ----- 
From: "Robert d'Rozario" <ROZARIO at biop.ox.ac.uk>
To: "Discussion list for GROMACS users" <gmx-users at gromacs.org>
Cc: <gmx-users at gromacs.org>
Sent: Friday, November 05, 2004 1:07 AM
Subject: Re: [gmx-users] Re: Movie from PDB files


>
> Hi,
>
> One way is to do the following:  Concatenate all your pdb files.  Then
> load up vmd: File, new molecule, load, now play your trajectory.  How
> many files you have conactenated will be in the counter.  i.e 100 pdbs
> will show 100 in the counter place, by the slide bar.  Hope this helps
>
> On Thu, 4 Nov 2004, Gaurav Porwal wrote:
>
> > Dear Kay,
> >
> > I checked out the VMD site. As far as I can comprehend, VMD can
visualize
> > the simulation progress if one has a trajectory file generated from any
of
> > the molecular simulation softwares like gromacs.
> >
> > What I wanted specifically is that what can be done if one doesn't have
> > any trajectory file, instead a few thousand PDB files. One idea is to
> > convert all the files to jpeg images and make a movie out of it. If
anyone
> > can let me know a software that can generate jpeg for such large no. of
> > files automatically, then I would be grateful.
> >
> > Is there any other solution.
> >
> > Thanks.
> > regards,
> > Gaurav
> >
> >
> > > Message: 2
> > > Date: Wed, 3 Nov 2004 10:56:21 +0200
> > > From: Kay Gottschalk <kay.gottschalk at weizmann.ac.il>
> > > Subject: Re: [gmx-users] Movie from PDB files
> > >
> > > VMD does it.
> > > K.
> > >
> >
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