[gmx-users] continuation of simulation

Choon Peng cpchng at bii.a-star.edu.sg
Tue Nov 9 01:44:07 CET 2004


Dear Dinesh,

  Just to add to what Ran has said:

tpbconv -f traj.trr -s topol.tpr -e ener.edr -o tpxout.tpr -extend 6000

The "-e ener.edr" only exists in GROMACS 3.2.x and helps preserve accuracy
of runs under temperature/pressure coupling.

Use tpxout.tpr in place of topol.tpr in your MD run.

However, note that tpxout.tpr preserves whatever settings you have used for
topol.tpr, including the number of processors to be used for a parallel run.


regards,
Choon-Peng

On 11/9/04 7:49 AM, "Ran Friedman" <ran at hemi.tau.ac.il> wrote:

> Dear Dinesh,
> 
> use tpbconv to make a new input file for your run.
> 
> Ran.
> 
> Dinesh Pinisetty wrote:
> 
>> 
>> 
>> Dear users,
>>            I have simulated a system for 4ns.Now I want to continue that
>> till 10 ns.How to start from where I left and rerun the simulation for
>> extended times.
>> Thanking you,
>> Dinesh.
>> 
>> _______________________________________________
>> gmx-users mailing list
>> gmx-users at gromacs.org
>> http://www.gromacs.org/mailman/listinfo/gmx-users
>> Please don't post (un)subscribe requests to the list. Use the
>> www interface or send it to gmx-users-request at gromacs.org.
>> 
>> +++++++++++++++++++++++++++++++++++++++++++
>> This Mail Was Scanned By Mail-seCure System
>> at the Tel-Aviv University CC.
>>  
>> 




More information about the gromacs.org_gmx-users mailing list