[gmx-users] big membrane

Michael mgang at pob.huji.ac.il
Tue Nov 9 11:05:47 CET 2004

Dear Dr. Warren
Thank you for your kind response.
I have now a new problem.
After I make the bigger membrane with genconf and make energy  
minimization the system explodes.
(The energy after the em is somethink like e-15)
Have you an idea how to solve it?
Thanks in Advance,
Michael Gang.

On Nov 8, 2004, at 2:04 AM, Dallas Warren wrote:

> The biggest bilayer I've got is with a box of 6.176 6.176 6.608 and
>  when i try to put the protein in the membrane it destroys the  
> membrane.
>  Does anyone know where i can get a dmpc bilayer large enough to put  
> the
>  protein in it ?
>  If not,maybey has anyone an idea how to make the membrane bigger?
>  Why don't you use genconf and make it a 2x2x2 layer?  Or something  
> like that.
>  Catch ya,
> Dr. Dallas Warren
> Research Fellow
> Department of Pharmaceutical Biology and Pharmacology
>  Victorian College of Pharmacy, Monash University
>  381 Royal Parade, Parkville VIC 3010
> dallas.warren at vcp.monash.edu.au
> +61 3 9903 9083
> ----------------------------------------------------------------------- 
> ---
> When the only tool you own is a hammer, every problem begins to  
> resemble a nail.
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