[gmx-users] trr visualization

Cesar Lopez inmuno_cl at yahoo.com
Fri Nov 12 16:15:21 CET 2004


Thank you Kay, I am going to do that
Cesar
--- Kay Gottschalk <kay.gottschalk at weizmann.ac.il>
wrote:

> You need to load the start configuration as either
> .gro or .pdb with 
> vmd first.
> K.
> 
> On Nov 12, 2004, at 12:22 AM, Cesar Lopez wrote:
> 
> > Hi anybody:
> >
> > I have some problems with .trr files
> > visualizations,nowadays I have the VMD package
> > installed in my pc, when I try to load a trr file,
> the
> > software load the file, but indeed I can't see
> > anything in the screen. I tried to use the VEGA
> > package to see the .xtc file generated by Gromacs,
> but
> > the software can't open it !
> >
> > There is only a way to see the file and is with
> the
> > comand ngmx, but the resolution is not good and it
> > can't write pdb files.
> > Can anybody help me with it?
> > Thank you very much
> > Cesar
> >
> >
> > 		
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> Dr. Kay-E. Gottschalk
> Department of Biological Chemistry
> Weizmann Institute of Science
> Herzl St. 1
> Rehovot
> Israel
> +972-8-934 3639
> 
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