[gmx-users] flying water on monolayer
Hector Martinez-Seara Monne
h.seara at qf.ub.es
Fri Nov 12 16:26:25 CET 2004
Hi all (sorry for send it again),
I'm simulating a monolayer in gromacs 3.2.1. I have a brief question
that maybe someone more experimented has just due with. The fact is that
everything seems to be all right except that some waters (6 of 20000)
fly away from the bottom of the layer of water under the monolayer till
reach the the top of the monolayer ( I'm using periodic conditions xyz),
some of them remain there some time then they come back to the water
layer but in fact there's always an average of water molecules in the
top of my monolayer. The force field that I'm using is GROMACS (
gromos-87 + extended) and the water are SPC. That's normal? there's any
way to fix it? There are any significant change for that I have to take
in consideration?
Thank you, Hector
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Hector Martínez-Seara Monné
Universidad de Barcelona
Dept. Química Fisica
hseara at netscape.net
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