[gmx-users] How to benchmark gromacs

Rajiv jrajiv at hclinsys.com
Tue Nov 23 12:02:20 CET 2004


Dear All,
    Now, I am running job in d.ddpc/ folder of gmxbench.tar.gz in parallel. 
After grompp I have executed "mpirun -np 4 -defnm topol -v stepout 100. When 
will this job complete. It is showing approximate time when it will 
complete. Can you tell me what operation does the files in folder of gromacs 
benchmark does, d.dppc/ , d.lzm/ , d.poly-ch2/, d.villin/ .

Regards,
Rajiv

----- Original Message ----- 
From: "David van der Spoel" <spoel at xray.bmc.uu.se>
To: "Discussion list for GROMACS users" <gmx-users at gromacs.org>
Sent: Tuesday, November 23, 2004 1:36 PM
Subject: Re: [gmx-users] How to benchmark gromacs


> On Tue, 2004-11-23 at 10:20 +0530, Rajiv wrote:
>> Dear All,
>>     I have installed GROMACS sucessfully. How should I bechmark and
>> test it. I am newbie to this area. Pls guide me for the same.
> Run tutorial first. Then download benchmarks and run them.
>>
>> Regards,
>> Rajiv
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> -- 
> David.
> ________________________________________________________________________
> David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
> Dept. of Cell and Molecular Biology, Uppsala University.
> Husargatan 3, Box 596,          75124 Uppsala, Sweden
> phone:  46 18 471 4205          fax: 46 18 511 755
> spoel at xray.bmc.uu.se    spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
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