[gmx-users] (no subject)

[Anton Feenstra]

SLN Prasad Reddy wrote:

>   
> 
> Dear Gromacs users,
>          I installed gromacs 3.1 and working on a protein having 247 amino acids ,ATP and Mg++. I could generate waterbox by using genbox command. When i tried "grompp" command to get "xxx.tpr" to use with "genion" command,it is showing following error. 
> 
> 
> calling /lib/cpp...
> sh: /lib/cpp: No such file or directory
> cpp exit code: 32512
> Tried to execute: '/lib/cpp  -I/usr/local/share/gromacs/top -DFLEX_SPC nbd.top > gromppAXEl1v'
> The '/lib/cpp' command is defined in the .mdp file

The pre-processor failed. Possibly you changed something else also in your 
.mdp file when changing nsteps. Are you working on an MS windows machine?


-- 
Groetjes,

Anton
  _____________ _______________________________________________________
|             |                                                       |
|  _   _  ___,| K. Anton Feenstra                                     |
| / \ / \'| | | Dept. of Pharmacochem. - Vrije Universiteit Amsterdam |
|(   |   )| | | De Boelelaan 1083 - 1081 HV Amsterdam - Netherlands   |
| \_/ \_/ | | | Tel: +31 20 44 47608 - Fax: +31 20 44 47610           |
|             | Feenstra at few.vu.nl - www.few.vu.nl/~feenstra/         |
|             | "If You See Me Getting High, Knock Me Down" (RHCP)    |
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