[gmx-users] the protein drifts when molecular dynanic simulation

[David van der Spoel]

On Tue, 2004-11-30 at 20:39 +0800, zjim wrote:
> Dear gmx-user
> When perform protein md in a box with, the protein drifts to one side
> of the box,and as the md ends(6 ns),some of it even comes out the
> box,this maybe a problem. so my quesition is why is the protein drift
> when simulation and how to avoid this.
it's not a problem. see archived messages.

> Somebody maybe help me
> thank you in advance
> 
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,          75124 Uppsala, Sweden
phone:  46 18 471 4205          fax: 46 18 511 755
spoel at xray.bmc.uu.se    spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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