[gmx-users] dssp problem

[Anton Feenstra]

smith wrote:

>  dear all,
> 
> I have installed the directory dsspcmbi itself in /usr/local/bin/.
> I downloaded the program from cmbi and put the directory in the above area.The readme says to compile by typing ./dsspcmbigcc for linux systems and then execute.
>  But his does not work for a single pdb itself.

After compiling (dsspcmbigcc), you should have a binary executable (probably
called 'dssp') somewhere. It could be under the dsspcmbi directory (e.g.
at dsspcmbi/bin/dssp), or in another 'install' location, like /usr/local/bin/dssp.
Possibly, the dsspcmbigcc has told you what it did, and where the resulting
program can be found.

If you can't get it to work for a single pdb file, you can forget about do_dssp.


-- 
Groetjes,

Anton
  _____________ _______________________________________________________
|             |                                                       |
|  _   _  ___,| K. Anton Feenstra                                     |
| / \ / \'| | | Dept. of Pharmacochem. - Vrije Universiteit Amsterdam |
|(   |   )| | | De Boelelaan 1083 - 1081 HV Amsterdam - Netherlands   |
| \_/ \_/ | | | Tel: +31 20 44 47608 - Fax: +31 20 44 47610           |
|             | Feenstra at few.vu.nl - www.few.vu.nl/~feenstra/         |
|             | "If You See Me Getting High, Knock Me Down" (RHCP)    |
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