[gmx-users] dssp problem
feenstra at few.vu.nl
Tue Oct 5 11:32:59 CEST 2004
> dear all,
> I have installed the directory dsspcmbi itself in /usr/local/bin/.
> I downloaded the program from cmbi and put the directory in the above area.The readme says to compile by typing ./dsspcmbigcc for linux systems and then execute.
> But his does not work for a single pdb itself.
After compiling (dsspcmbigcc), you should have a binary executable (probably
called 'dssp') somewhere. It could be under the dsspcmbi directory (e.g.
at dsspcmbi/bin/dssp), or in another 'install' location, like /usr/local/bin/dssp.
Possibly, the dsspcmbigcc has told you what it did, and where the resulting
program can be found.
If you can't get it to work for a single pdb file, you can forget about do_dssp.
| | |
| _ _ ___,| K. Anton Feenstra |
| / \ / \'| | | Dept. of Pharmacochem. - Vrije Universiteit Amsterdam |
|( | )| | | De Boelelaan 1083 - 1081 HV Amsterdam - Netherlands |
| \_/ \_/ | | | Tel: +31 20 44 47608 - Fax: +31 20 44 47610 |
| | Feenstra at few.vu.nl - www.few.vu.nl/~feenstra/ |
| | "If You See Me Getting High, Knock Me Down" (RHCP) |
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