[gmx-users] (no subject)

[herbst at fhi-berlin.mpg.de]

Hi all,

I need to read the coordinates of certain atoms from my trr-file from my
simulation. I have seen that the trr file can be converted to ascii with
gmxdump, but the files are very large,and for I have 500 ns simulations
and I need to do that for a lot of simulations, I do not have enough
space.
Is there any way to extract only the coordinates for, say, atom 3 - 6, for
every timestep? How would you do it?

Thanks,
Anna