[gmx-users] ED analysis

[Ruben M Buey]

No.

> You should do:
> g_anaeig -proj
> (default is -last 8)
> and then:
> g_anaeig -f proj -cc

g_anaeig -v eigenvec.trr -f beta_gdp_ca.xtc -s beta_gdp_ca.pdb -proj 
proj1_8.xvg
g_analyze instead g_anaeig?
with
g_analyze -f proj1_8.xvg -cc I only obtain:

Cosine content of set 1 with 0.5 periods: 0.849278

But what about the rest of eigenvectors??

Thanks you,
Cheers,
Ruben

>
> You will certainly get higher numbers for vectors 2-5.
>
> Berk.
>
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-- 
------------------------------------------------------
Ruben M Buey. PhD student. Lab 308
Centro de Investigaciones Biologicas
Consejo Superior de Investigaciones Cientificas
Dpt. Protein Function and Structure
C/ Ramiro de Maeztu, 9 
28040  Madrid   (SPAIN)
Phone:   34-918373112 ext 4380
Fax:     34-915360432
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