[gmx-users] help with creating membrane

Milan Melichercik melicher at cray.dbp.fmph.uniba.sk
Tue Sep 14 16:01:04 CEST 2004

Hi all
I have to create a lipid membrane but I have this problem. I have bilayer of 
lipids with something bigger 'area per lipid' parameter cause I want to 
laterally compress them. But these lipids are just settled by genconf 
program. I've tried to make the sd energy minimisation but when I used 
periodic boundaries, the membrane exploded (or something like that), and if I 
not, whole membrane collapsed into a sphere. So if somebody has any 
experiences with constructing membranes, I will be pleased if he/she will 
share them. Especially I will be pleased by example .mdp files.


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