[gmx-users] gromacs on mac osx

Choon Peng cpchng at bii.a-star.edu.sg
Wed Sep 22 03:16:23 CEST 2004


Hi Eric,

  I mean try using the full path, say:
/usr/local/gromacs/powerpc-apple-darwin7.0.0/bin/grompp

However, what I have on my laptop is the 3.1.5_pre1 version. Having problems
compiling 3.2.1 on my PowerBook but ok on our PowerMac G5...
Guess I'll have to try again.

cheers,
Choon Peng

On 9/22/04 8:59 AM, "Yunfeng Hu" <yunfeng at scripps.edu> wrote:

> Can you specify what you mean? I am compiling it on a G4 ibook. Thanks.
> 
> Eric
> On Sep 21, 2004, at 5:35 PM, Choon Peng wrote:
> 
>> Hi Eric,
>> 
>>   Can you try using the full path to the grompp and mdrun?
>> 
>> cheers,
>> Choon Peng
>> PS: I have Gromacs on my G4 laptop and our G5 cluster.
>> -- 
>> Mr Choon-Peng Chng
>> Research Associate
>> Computational Biology Group
>> Bioinformatics Institute, A*STAR
>> 30 Biopolis Street, Level 7. Singapore 138671.
>> DID: +65 6478 8301 FAX: +65 6478 9047
>> WWW: http://www.bii.a-star.edu.sg/~cpchng
>> 
>> On 9/22/04 7:24 AM, "Yunfeng Hu" <yunfeng at scripps.edu> wrote:
>> 
>>> Hi, I compiled fftw and gromacs 3.2 on mac osx without error. However
>>> I
>>> get segmentation errors when I run the tutorials. Does anyone have
>>> similar experiences? Thanks.
>>> 
>>> Eric Hu, Ph.D.
>>> 
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> ###################################
> Yunfeng Hu, Ph.D
> Research Associate
> Department of Molecular Biology, MB-5
> The Scripps Research Institute
> 10550 North Torrey Pines Road
> La Jolla, CA 92037
> Tel. (858) 784-2204
> Fax. (858) 784-2860
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