[gmx-users] trajectory movie
Nancy Deng
jdeng at adrik.bchs.uh.edu
Fri Apr 1 19:54:17 CEST 2005
Dear All,
I'm just wondering whether anyone could suggest me some (free) tools to make a movie from the MD trajectory file. Then the movie (in .avi format etc) could be inserted into power point for presentation.
Appreciate your any information.
nancy
----- Original Message -----
From: Nancy Deng
To: Discussion list for GROMACS users
Sent: Thursday, March 31, 2005 3:24 PM
Subject: Re: [gmx-users] g_gyrate
Dear All,
I have done 2ns MD with gmx_FF and was trying to calculate the radius of gyration of the entire protein by: g_gyrate -s 2ns.tpr -f 2ns.trr -o 2ns.xvg
The program stopped at 560ps with the "fatal error: Can not determine precision of trn file, quit!"
Does any one please have any idear what really happend here??? what's the trn file?
Thanks,
nancy
----- Original Message -----
From: narender maan
To: gmx-users at gromacs.org
Sent: Thursday, March 24, 2005 10:54 AM
Subject: [gmx-users] g_anaeig
Dear gmx-users
I am doing ED of my simulation and while using g_anaeig the file (eigrmsf.xvg) i am getting for rmsf (by using -rmsf option) is for all the atoms in the protein. So i was wondering if there's anyway to calculate averages for each residue in eigrmsf.xvg instead of atoms (like the way it is in g_rmsf by using the option of -res)
thank you
NSM
----------------------------------------------------------------------------
_______________________________________________
gmx-users mailing list
gmx-users at gromacs.org
http://www.gromacs.org/mailman/listinfo/gmx-users
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-request at gromacs.org.
------------------------------------------------------------------------------
_______________________________________________
gmx-users mailing list
gmx-users at gromacs.org
http://www.gromacs.org/mailman/listinfo/gmx-users
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-request at gromacs.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20050401/277a620c/attachment.html>
More information about the gromacs.org_gmx-users
mailing list