[gmx-users] dummy atom vdw interactions

David van der Spoel spoel at xray.bmc.uu.se
Tue Aug 2 10:06:12 CEST 2005

On Tue, 2005-08-02 at 11:39 +0800, Mu Yuguang (Dr) wrote:
> Dear gromacs users,
> We find that the dummy atoms do not have vdw interaction with other
> atoms, even though we assign vdw parameters to the dummy atom type.
> Is it a normal setting up in gromacs?
No, did you run gmxdump to check your tpr file?

> Yuguang
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David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,          75124 Uppsala, Sweden
phone:  46 18 471 4205          fax: 46 18 511 755
spoel at xray.bmc.uu.se    spoel at gromacs.org   http://xray.bmc.uu.se/~spoel

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