[gmx-users] visualization tools for trajectories

Eric Jakobsson jake at ncsa.uiuc.edu
Tue Aug 2 21:17:01 CEST 2005

We use pymol.

At 07:06 PM 8/1/2005, you wrote:
>Hi All,
>Does anyone have any suggestions for tools to view trajectories.
>I have a few .xtc files that are of 1ns simulations that are about 40Mb.
>I have a few .xtc files that are of 5ns simulations that are about 200Mb.
>I'm using VMD right now, but unfortunately it won't let me see the back 
>50% of my 5ns simulations.  At the stop point a molecule looks to be out 
>of place and I can't view any further into the trajectory even though I 
>know more data is there and my simulation log doesn't have any errors.
>Any suggestions?
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Eric Jakobsson, Ph.D.
Professor, Department of Molecular and Integrative Physiology, and of 
Biochemistry, and of the Center for Biophysics and Computational Biology
Senior Research Scientist, National Center for Supercomputing Applications
Professor, Beckman Institute for Advanced Science and Technology
4021 Beckman Institute, mc251
University of Illinois, Urbana, IL 61801
ph. 217-244-2896       fax 217-244-2909

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