[gmx-users] RE: looped dna

Mu Yuguang (Dr) YGMu at ntu.edu.sg
Tue Aug 9 11:16:40 CEST 2005

Dear Gromacs users
When I try to simulate a looped DNA system, also called periodic dna
(the two ends of dna is bonded). 
But there is some errors:

Removing pbc first time
There were 4 inconsistent shifts. Check your topology
Done rmpbc

When I remove the bond which link the two ends, everything is OK.


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