[gmx-users] Grompp error

Farid Sa'adedin fsaadedi at staffmail.ed.ac.uk
Thu Dec 1 17:52:51 CET 2005

Dear Users,

I have added Cl ion to my peptide in water system pdb and topology files.
But I have a problem when I run grompp:

Fatal Error: Atoms in the .top are not numbered consecutively from 1.

The pdb is numbered correctly and I have added the the spc.itp and 
clion.itp to the topology file.

Any ideas would be appreciated

Thank you in advance.

Farid Sa'adedin

Farid Sa'adedin
Membrane Biophysics Laboratory
Department of Veterinary Biomedical Sciences
College of Medicine & Veterinary Medicine
Royal (Dick) School of Veterinary Studies
University of Edinburgh
Edinburgh EH9 1QH

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