[gmx-users] Deforming a DNA molecule by applying a force

Bob Johnson robertjo at physics.upenn.edu
Fri Dec 2 01:48:03 CET 2005

Hello everyone,
I want to force a single stranded DNA molecule into a linear conformation with
all the bases stacked on top of one another. This can be done by simply pulling
the terminal phosphorous atoms away from each other to apply tension to the DNA
molecule. Is there a way to do this in Gromacs?
Bob Johnson

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