[gmx-users] About using dodecahedron in editconf

David van der Spoel spoel at xray.bmc.uu.se
Sun Dec 4 11:24:29 CET 2005

qiwenpeng at sinap.ac.cn wrote:

>Dear David:
>Thank you very much !
>But I want to know why use this parameter?
>Is there is something special in the DNA simulating?
No, but think that you have an elongated molecule in an elongated box 
and that the molecule rotates by 90 degrees...

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David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel

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