[gmx-users] topology peptide plane

abelius abelius at gmail.com
Tue Dec 6 17:54:09 CET 2005

Dear All,

I'm trying to write some scripts for converting topology files.
But I need some more info in the used formats.

My question is how can I define a peptide plane in a topology include file
lets say my system is:
  O(3)       C(5)
   \\           /
    C(2) - N(4)
  /             \
C(1)          H(6)

Thnx in advance,

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