[gmx-users] can not run parallel

Naser, Md Abu mn2 at hw.ac.uk
Fri Dec 9 14:16:31 CET 2005


Thanks david for your response. Yes, I lambooted first.I also tried with mpirun -c c2c -O. It runs ok with the single node.

regards,

Abu Naser
School Of Life Sciences
Heriot-Watt University
Edinburgh
EH14 4AS 
Email: mn2 at hw.ac.uk
Phone: +44(0)1314518265
Mobile:+44(0)7814877110



-----Original Message-----
From: gmx-users-bounces at gromacs.org on behalf of David van der Spoel
Sent: Fri 12/9/2005 1:00 PM
To: Discussion list for GROMACS users
Subject: Re: [gmx-users] can not run parallel
 
Naser, Md Abu wrote:
> Hi All,
> I have newley installed the lam/mpi and gromacs. When I run mpirun -np 8 
> mdrun_mpi -s .tpr -o .trr -np 8, it gives the following error:
> 
> mpirun: cannot start mdrun_mpi on n1: No such file or directory
have you run lamboot?
> 
> Has anyone got any idea?
> 
> 
> Abu Naser
> School Of Life Sciences
> Heriot-Watt University
> Edinburgh
> EH14 4AS
> Email: mn2 at hw.ac.uk
> Phone: +44(0)1314518265
> Mobile:+44(0)7814877110
> 
> 
> ------------------------------------------------------------------------
> 
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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