[gmx-users] can not run parallel
Naser, Md Abu
mn2 at hw.ac.uk
Fri Dec 9 14:16:31 CET 2005
Thanks david for your response. Yes, I lambooted first.I also tried with mpirun -c c2c -O. It runs ok with the single node.
regards,
Abu Naser
School Of Life Sciences
Heriot-Watt University
Edinburgh
EH14 4AS
Email: mn2 at hw.ac.uk
Phone: +44(0)1314518265
Mobile:+44(0)7814877110
-----Original Message-----
From: gmx-users-bounces at gromacs.org on behalf of David van der Spoel
Sent: Fri 12/9/2005 1:00 PM
To: Discussion list for GROMACS users
Subject: Re: [gmx-users] can not run parallel
Naser, Md Abu wrote:
> Hi All,
> I have newley installed the lam/mpi and gromacs. When I run mpirun -np 8
> mdrun_mpi -s .tpr -o .trr -np 8, it gives the following error:
>
> mpirun: cannot start mdrun_mpi on n1: No such file or directory
have you run lamboot?
>
> Has anyone got any idea?
>
>
> Abu Naser
> School Of Life Sciences
> Heriot-Watt University
> Edinburgh
> EH14 4AS
> Email: mn2 at hw.ac.uk
> Phone: +44(0)1314518265
> Mobile:+44(0)7814877110
>
>
> ------------------------------------------------------------------------
>
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--
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
spoel at xray.bmc.uu.se spoel at gromacs.org http://xray.bmc.uu.se/~spoel
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