[gmx-users] pdb2gmx

[Pradeep Kota]

thanks Mr.Larsson..
but i checked the pdb file for such errors and couldnt find any. there are
four chains in my pdb file. and each chain is named separately and all
chains are separated by ter tags properly. is there any other possibility of
this error?
thanks again..
reg.
tand


On 12/14/05, Per Larsson <per.larsson at sbc.su.se> wrote:
>
> Check your pdb-file using a text editor of some sort.
> Probably you have the same chainID for some residues with another (or
> possibly none) chain ID in between. All residues belonging to the same
> chain need to have the same chain identifier.
>
> Regards
> /Per
>
>
> Pradeep Kota wrote:
>
> > hi
> > i'm new to gromacs
> > pdb2gmx gives an error
> > i have a two subunit protein
> > pdb2gmx says
> > fatal error : use of same chain marker A in non sequential residues
> > and it displays the atom number also.
> > i checked the pdb file and the two domains are file and i visualised
> > them using rasmol. wat do i do?
> > thanks for any help
> > tand
> >
> >------------------------------------------------------------------------
> >
> >_______________________________________________
> >gmx-users mailing list
> >gmx-users at gromacs.org
> >http://www.gromacs.org/mailman/listinfo/gmx-users
> >Please don't post (un)subscribe requests to the list. Use the
> >www interface or send it to gmx-users-request at gromacs.org.
> >
>
> --
> ********************************
> Per Larsson
> PhD Student
> Stockholm Bioinformatics Center
> +46 (0) 8 55378577
> +46 (0) 733 461467
> per.larsson at sbc.su.se
> www.sbc.su.se
>
> _______________________________________________
> gmx-users mailing list
> gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20051214/f7361ac2/attachment.html>