[gmx-users] Minimization problem, again!

[andrea spitaleri]

Hi Liu,
I explain it a bit better.  Basicaly I create my system protein/membrane 
with vmd, not taking in account possible clashes. Afterwards, I use the 
gromacs tools, genbox, in order to solvate the protein with the membrane 
as well described here:
http://www.dddc.ac.cn/embo04/practicals/9_16.htm
genbox remove in such way eventual clashes.

I hope this is a bit clearer

Regards

andrea

-- 
-------------------------------
Andrea Spitaleri
Dulbecco Telethon Institute
c/o DIBIT Scientific Institute
Biomolecular NMR, 1B4
Via Olgettina 58
20132 Milano (Italy)
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