[gmx-users] Minimization problem, again!

andrea spitaleri spitaleri.andrea at hsr.it
Thu Dec 15 14:45:22 CET 2005

Hi Liu,
I explain it a bit better.  Basicaly I create my system protein/membrane 
with vmd, not taking in account possible clashes. Afterwards, I use the 
gromacs tools, genbox, in order to solvate the protein with the membrane 
as well described here:
genbox remove in such way eventual clashes.

I hope this is a bit clearer



Andrea Spitaleri
Dulbecco Telethon Institute
c/o DIBIT Scientific Institute
Biomolecular NMR, 1B4
Via Olgettina 58
20132 Milano (Italy)
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