[gmx-users] trjconv issues

[Yang Ye]

I suspect it is was a limit of the memory because trjconv first read all 
trajectory into memory and then writes pdb. Watch for trjconv's output 
messages.

  Michael Bajomo wrote:

> Hiy guys,
>  
> When I used trjconv to convert a 2ns (1,000,000 steps) trajectory file 
> (.trj)of a protein in water into pdb format, the pdb file only 
> contains the first 12ps. Why is this? Does trjconv have a limit on the 
> filesize it will make or the number of steps it will consider? Thanks 
> for all your help.
>
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-- 
/Regards,/
Yang Ye
/Computational Biology Lab
School of Biological Sciences
Nanyang Technological University
Singapore
Tel: 6316-2884
/