[gmx-users] [Fwd: "ref_t and tau_t values" problem]

[Yang Ye]

Make the group names tally with what is inside your index file. And use 
-n to supply your index file to grompp.

Yang Ye

Itamar Kass wrote:

>try use: tc-grps		    =  Protein 	SOL    Na
>instaed of: tc-grps		    =  Protein 	SOL    Na+
>
>   Itamar.
>Quoting David van der Spoel <spoel at xray.bmc.uu.se>:
>
>  
>
>>-------- Original Message --------
>>Subject: 	"ref_t and tau_t values" problem
>>Date: 	Sun, 25 Dec 2005 18:28:10 +0330
>>From: 	hnam <mahnam at ibb.ut.ac.ir>
>>To: 	David van der Spoel <spoel at xray.bmc.uu.se>
>>
>>
>>
>>
>>
>>I use ff G43a1 and I added 9 Na+ to my top file
>>When I run grompp  with pr.mdp it says:
>>Program grompp, VERSION 3.3
>>Source code file: readir.c, line: 1131
>>Fatal error:
>>Not enough ref_t and tau_t values!
>>Will you please tell me what I must do ?
>>
>>
>>Thank you very much in advance
>>Institute of  Biochemistry  and  Biophysics (IBB)
>>Tehran University
>>P.O.box 1417614411
>>Tehran
>>Iran
>>
>>
>>--
>>David.
>>________________________________________________________________________
>>David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
>>Dept. of Cell and Molecular Biology, Uppsala University.
>>Husargatan 3, Box 596,  	75124 Uppsala, Sweden
>>phone:	46 18 471 4205		fax: 46 18 511 755
>>spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>>
>>    
>>
>
>
>
>
>===========================================
>| Itamar Kass
>| The Alexander Silberman
>| Institute of Life Sciences
>| Department of Biological Chemistry
>| The Hebrew University, Givat-Ram
>| Jerusalem, 91904, Israel
>| Tel: +972-(0)2-6585194
>| Fax: +972-(0)2-6584329
>| Email: ikass at cc.huji.ac.il
>| Net: http://www.ls.huji.ac.il/~membranelab/itamar/itamar_homepage.html
>============================================
>
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-- 
/Regards,/
Yang Ye
/Computational Biology Lab
School of Biological Sciences
Nanyang Technological University
Singapore
Tel: 6316-2884
/