[gmx-users] About NME group construction

[David van der Spoel]

On Tue, 15 Feb 2005 ygao at phase1.unl.edu wrote:

>I use this command line to generate the ala.ndx:
>
>/home/zeng/chgy/para-gromacs/x86_64-unknown-linux-gnu/bin/pdb2gmx -f a.pdb
>-o ala.gro -p ala.top -ter -n ala.ndx
>
>And the ala.ndx file is below:
>
>[ prot_sort ]
>   1    2    3    4    5    6    7    8    9   10   11   12
>
>Do you know what does this mean?
>
No.

Use make_ndx to make an index file.

-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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