[gmx-users] including missing atoms

[Alan Wilter Sousa da Silva]

Hi List!

I know that GMX warns about missing atoms in PDB, and, if one wants, it'll 
generate an incomplete topology. However, is there no option of pdb2gmx to 
rebuild automagically the missing atoms to complete such deficient residue 
and have a complete topology (but, of course, warned about that)? If I'm 
not wrong, spdbviewer can do that.

If GMX is able to do that, can someone suggest another programme which 
would be able to achieve that automaticaly?

Thanks in advance for any help.

Cheers,
Alan

-- 
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Alan Wilter Sousa da Silva
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D.Sc. - IBCCF/UFRJ
Projeto BioPAUA - HP/LNCC
Petrópolis (RJ), Brasil
www.lncc.br/~alan